This dataset contains CCS corrected HiFi long-read DNA sequencing (lrDNAseq) in FASTQ format for 100 PMDBS samples from Parkinson's patients and healthy controls. It's part of the PD5D atlas, where the same subjects were also profiled with other omics assays including genotyping, single-cell ATACseq, and spatial transcriptomics. ASAP Team: Scherzer Dataset Name: scherzer-pmdbs-lr-wgs, v1.0 Principal Investigator: Clemens Scherzer Co-Principal Investigator: Joshua Levin; Xianjun Dong Contributors: Kim, Kwanho; Lin, Zechuan; Simmons, Sean; Parker, Jacob; Kearney, Matthew; Liao, Zhixiang; Haywood, Nathan; Zhang, Jixiang; Cline, Madison; Tuncali, Idil; Sharma, Monika; Serrano, Geidy; Beach, Thomas; Dong, Xianjun; Popic, Victoria; Scherzer, Clemens; Levin, Joshua Sample Summary: Resources and Additional Information Protocols GitHub: https://github.com/kimkh415/VariantAnalysis Protocols: See metadata Dataset DOI: https://doi.org/10.5281/zenodo.19124632 Associated Publications: NA CRN Cloud GitHub: https://github.com/ASAP-CRN CRN Cloud DOI: https://doi.org/10.5281/zenodo.8384742 CRN Cloud Data Dictionary:...
Access requires approval by the data custodian. The collection's description and structure are public; querying the data requires an approved request.
PD5D long read DNA-seq is published on ASAP CRN Cloud.