This dataset contains the raw data in FASTQ format for single-nucleus RNA sequencing (snRNAseq) enriched with Agilent SureSelect for reads from a list of targeted transcripts for human middle temporal gyrus (MTG) samples from Parkinson's patients and healthy controls. This data comes from the same 10X libraries as PD5D_MTG_snRNAseq, except with the additional enrichment step before sequencing. It's part of the PD5D cohort, where the same subjects were also profiled with other omics assays incl. genotyping, single-cell ATACseq, and spatial transcriptomics. ASAP Team: Scherzer Dataset Name: scherzer-pmdbs-sn-rnaseq-mtg-hybsel, v1.2 Principal Investigator: Clemens Scherzer Co-Principal Investigator: Joshua Levin; Xianjun Dong Contributors: Simmons, Sean; Scherzer, Clemens; Dong, Xianjun; Levin, Joshua; Serrano, Geidy; Beach, Thomas; Cline, Madison; Liao, Zhixiang; Tuncali, Idil; Sharma, Monika; Parker, Jacob; Lin, Zechuan; Yuan, Jie; Haywood, Nathan; Lin, Maoxuan; Kim, Kwanho; Teng, Xufei; El Kodsi, Daniel Sample Summary: Resources and Additional Information Protocols GitHub: https://github.com/seanken/ASE_Central Protocols:...
Access requires approval by the data custodian. The collection's description and structure are public; querying the data requires an approved request.
PD5D single-nucleus RNA-seq hybrid selection is published on ASAP CRN Cloud.