Bulk RNA-seq data from 234 samples derived from PMDBS samples across Substantia Nigra, Caudate, Putamen, Parahippocampal Gyrus, Cingulate Cortex, Temporal Cortex, Frontal Cortex, Parietal Cortex Types of Samples: (Braak 3-4) PD and control post-mortem brains. https://github.com/Jbrenton191/RNAseq_splicing_pipeline ASAP Team: Wood Dataset Name: wood-pmdbs-bulk-rnaseq, v1.1 Principal Investigator: Nicholas Wood Co-Principal Investigator: Mina Ryten Contributors: Toomey, Christina; Fairbrother-Browne, Aine; Brenton, Jonathan; Grant-Peters, Melissa; Lahica, Joeanne; Ryten, Mina Sample Summary: Resources and Additional Information Protocols GitHub: fastq to mapped pipeline: https://github.com/Jbrenton191/RNAseq_splicing_pipeline Protocols: NA Dataset DOI: https://doi.org/10.5281/zenodo.16749007 Associated Publications: NA CRN Cloud GitHub: https://github.com/ASAP-CRN CRN Cloud DOI: https://doi.org/10.5281/zenodo.8384742 CRN Cloud Data Dictionary: https://storage.googleapis.com/asap-public-assets/wayfinding/ASAP-CRN-Cloud-Data-Dictionary.pdf Data Dictionary Version: v4.4 CRN Cloud Release Number: v5.0.0 Verily Workbench is the preferred environment for conducting analysis on all data...
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Bulk RNA-seq of human post-mortem brain tissue from Parkinson's disease and control donors (Team Wood) is published on ASAP CRN Cloud.